PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_11133_f_6
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family HD-ZIP
Protein Properties Length: 811aa    MW: 89535.7 Da    PI: 5.9357
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_11133_f_6genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.84.5e-192785357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Neem_11133_f_6 27 KYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 85
                    5679*****************************************************97 PP

2START90.43.6e-291582822124
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++e+++v+ +g  g+++l 
  Neem_11133_f_6 158 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCPGVAARACGLVGLDPT-RVAEILKDRPSWYRDCRSVEVVNVLPTGnsGTVELL 251
                     789*******************************************************.8888888888************************** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EE CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwv 124
                     +++l+a+++l+p Rdf+ +Ry+  l++g++v
  Neem_11133_f_6 252 YMQLYAPTTLAPaRDFWLLRYTSVLEDGSLV 282
                     ************************9999876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.6612286IPR001356Homeobox domain
SMARTSM003895.3E-162490IPR001356Homeobox domain
SuperFamilySSF466894.11E-172690IPR009057Homeodomain-like
CDDcd000865.33E-172787No hitNo description
PfamPF000461.1E-162885IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.5E-192985IPR009057Homeodomain-like
CDDcd146861.10E-679118No hitNo description
PROSITE profilePS5084813.332148282IPR002913START domain
SuperFamilySSF559613.3E-19149284No hitNo description
Gene3DG3DSA:3.30.530.201.5E-9157282IPR023393START-like domain
SMARTSM002348.5E-9157358IPR002913START domain
PfamPF018524.6E-26158282IPR002913START domain
PfamPF086706.1E-52670810IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 811 aa     Download sequence    Send to blast
MSFSLAEMMA VSSGCKDSNK MVMDNGKYVR YTPEQVEALE RLYHECPKPS SMRRQQLIRE  60
CPILSNIEPK QIKVWFQNRR CREKQRKEAS RLQAVNRKLT AMNKLLMEEN DRLQKQVSQL  120
ATLATTDTSC ESVVTSGQHH LTPQHPPRDA SPAGLLSIAE ETLTEFLSKA TGTAVEWVQM  180
PGMKPGPDSI GIVAISHGCP GVAARACGLV GLDPTRVAEI LKDRPSWYRD CRSVEVVNVL  240
PTGNSGTVEL LYMQLYAPTT LAPARDFWLL RYTSVLEDGS LVPWSVPEVL RPLYESSTLL  300
AQKTTMAALR HLRQISQEIS QPNVTGWGRR PAALRALSQR LSRGFNEALN GFSDDGWSML  360
ESDGIDDVTV HVNSSPNKMM GLQLSYANGF PSMSNAVLCA KASMLLQDVP PAILLRFLRE  420
HRSEWADSSI DAYSAAAVKA GPCSLPVPRA GNFGGQVILP LAHTIENEEA SISLVEDISE  480
MCRYQELWQY LIKSNCSLQF LEVIKLENMA HYREDMIVPS DIFLLQLCSG VDENAIGTCA  540
ELVFAPIDAS FSDDAPIIPS GFRIIPLDSG KDASSPNRTL DLASALEVGP TGNKTSGDYP  600
SNCGSTKSVI TIAFQFAFEI HLQENVASMA RQYVRSIIAS VQRVALALSP CRFGSQAGLR  660
PPPGTPEAHT LARWICQSYR CYLGAELFKT EGSESILKTL WNHSDAVLCC SLKALPVFTF  720
ANQAGLDMLE TTLVALQDIT LEKIFDDNGR KTLCSEFPQI MQQGFMCLQG GICLSSMGRP  780
ISYERAVAWK VLNEEESAHC ICFMFINWSF V
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ5022395e-80FJ502239.1 Poncirus trifoliata class III HD-Zip protein 8 (ATHB8) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006450706.10.0hypothetical protein CICLE_v10007435mg
SwissprotQ391230.0ATHB8_ARATH; Homeobox-leucine zipper protein ATHB-8
TrEMBLA0A067GWM40.0A0A067GWM4_CITSI; Uncharacterized protein
TrEMBLV4UNG00.0V4UNG0_9R
STRINGVIT_04s0008g03250.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20222678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32880.10.0homeobox gene 8